![]() ![]() The order of groups in the file is used, not the number assigned to them in the file.The full color range is applied across the specified or selected groups in the chain (that is, the scale is relative, not absolute).(red = oxygen = C-terminal = end of chain = 3') (blue = nitrogen = N-terminal = start of chain = 5') Backbone displays (such as ribbons, cartoons, etc.) are rendered in the color of alpha carbons for proteins, phosphorus for nucleic acids.ĭefault element colors, by periodic table: Hover over any element to see more information.Ĭlick on an element to move to the same information in the Atomic Numbers table below. Related commands: color object cpk, set defaultColors Jmol, set defaultColors RasmolĪpplies color to each atom of the object according to element, as shown in the tables below. Atoms ('CPK' colors, default element colors) Many of the following coloring patterns apply only to PDB and mmCIF files for biomacromolecules. Information on RasMol colors is included for those who are adapting RasMol and Chime-based materials for use in Jmol. if the object is omitted, atoms is assumed.object can be atoms, bonds, backbone, cartoon, stars, rockets, ribbon, dots, label, echo, hbonds, ssbonds, axes, boundbox, measure, polyhedra, isosurface, pmesh, unitcell.color scheme is specified using pre-defined terms detailed on this page.(For the default colors and color values used in Jmol, see table below.) It can also be a JavaScript color name, a RasMol color name, or a Jmol color name. color is specified as decimal or hexadecimal triplets.Objects can be custom colored in Jmol using the color (or colour) command: color object color or color scheme ![]()
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